PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold40257-abinit-gene-0.0-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 272aa    MW: 30352 Da    PI: 5.7626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold40257-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183887255
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  augustus_masked-scaffold40257-abinit-gene-0.0-mRNA-1 38 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 87
                                                          799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3538101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-283895IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193895IPR016177DNA-binding domain
PROSITE profilePS5103219.5853895IPR001471AP2/ERF domain
PfamPF008475.3E-133887IPR001471AP2/ERF domain
CDDcd000183.14E-323894No hitNo description
PRINTSPR003679.2E-83950IPR001471AP2/ERF domain
PRINTSPR003679.2E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEIQFQQQKT TQHKKAGIPI SKDSKFKVRN RNTSNTNKFV GVRQRPSGRW VAEIKDTTQK  60
IRMWLGTFET AEEAARAYDE AACLLRGSNT RTNFITHVSL DSPLACRIRN LLKNKKGAIE  120
QQVNVDASST SCTPTVTPTI STSSSSTTST SSCVNSLSSQ DIRLFDGAYK PDLSNCREEF  180
ELGSSQSDPS CGFGLGFDRF SFTQEALDLP KNLTMPDTDT AELEISEFER MKVERQISAS  240
LYAMNGVHEY MEAVHDSAEE LWDLPPLCSL FC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070434.11e-124PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A067L5C61e-124A0A067L5C6_JATCU; Uncharacterized protein
STRINGVIT_08s0007g07250.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-30related to AP2 11